PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_70470.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family E2F/DP
Protein Properties Length: 349aa    MW: 39335 Da    PI: 4.3887
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_70470.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP78.65.6e-2544103771
       E2F_TDP   7 rlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                   +llt+kf++ll+++e+gi++ln++a++L   +v  ++RRiYDi+NVLe+++liek+ kn+irwkg
  MLOC_70470.2  44 GLLTKKFINLLKQAEDGILDLNNAAETL---EV--QKRRIYDITNVLEGIGLIEKTLKNRIRWKG 103
                   79**************************...99..****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013726.4E-2842103IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.72E-1643104IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.9E-2544105IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023192.5E-2244103IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146605.06E-47113219No hitNo description
SuperFamilySSF1440744.45E-33116219No hitNo description
PfamPF164211.4E-32118217IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MAISLTPHSY VPCRLGSFRI WLHLNLCSML LCTATYIYPD PSSGLLTKKF INLLKQAEDG  60
ILDLNNAAET LEVQKRRIYD ITNVLEGIGL IEKTLKNRIR WKGLDDSGVE LDNGLSGLQT  120
EVENLNLQEQ ALDERISDMR EKLRGLTEDE NSQRWLYVTE DDIKGLPCFQ NETLIAIKAP  180
HGTTLEVPDP DEAGDYLQRR YRIVLRSTLG PIDVYLVSQF DDGFENLGGA ATPPRHTNVP  240
EHGPCEDLHA TYATQSSKSI NVEYNIQHRQ NTPQDPTSND YGGMTRIIPS DVNTDADYWL  300
LTEGDVSITD MWETAPEVQW DTAVFLPEDV SSPHAHHSPR MEVPSMDQP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A8e-2240104974PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3663960.0AK366396.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2042K03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003575084.10.0PREDICTED: transcription factor E2FA-like isoform X3
RefseqXP_014755531.10.0PREDICTED: transcription factor E2FA-like isoform X1
SwissprotQ9FNY01e-103E2FA_ARATH; Transcription factor E2FA
TrEMBLM0YLA50.0M0YLA5_HORVD; Uncharacterized protein
STRINGMLOC_70470.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62537148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36010.11e-106E2F transcription factor 3